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chore: update prod from main#1066

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chore: update prod from main#1066
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@github-actions github-actions bot commented Mar 9, 2026

This pull request updates the prod branch with the latest changes from the main branch.

Make sure to merge this creating a merge commit.

Do not squash-merge this PR. Do not rebase and merge.

@fengelniederhammer
chore(website): delete unused astro components (#1063)
5e87d80 
* chore(website): delete unused astro components

* deleted too much...
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@fengelniederhammer
feat(website): compare side-by-side: don't reload the whole page when…
59b41cb 
… adding or removing a column (#1057)

* don't reload on "add column"

* don't reload on "remove column"

* fix weird issue where "add column" is sometimes not full height in Firefox

* 1057 styling

* update test
@fhennig @claude
feat(website): improve UX for W-ASAP collection analysis mode (#1055)
bbdc9ce 
* WIP

* Add UI component to link connection and show issues

* refactor(website): extract W-ASAP page components into separate files

Refactored WasapPage.tsx by extracting all inline components into separate files
in a new components subdirectory. This improves code organization and maintainability.

Components extracted:
- CollectionInfo: displays collection link and invalid variants
- NoDataHelperText: shows helpful messages when no data is available
- VariantFetchInfo: displays clinical sequence count with warnings
- WasapStats: shows amplicon sequences and sampling date stats

Additional changes:
- Moved WasapStats to bottom of page for both mutation and collection modes
- Removed completed TODO about collection link (now implemented in CollectionInfo)
- Cleaned up imports in WasapPage.tsx

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* fix(website): improve CollectionInfo component layout

Simplified the collection link display to be more concise:
- Title: "CoV-Spectrum collection" (instead of "Collection")
- Main text: Collection title as clickable link (reduced from 3 lines to 2)
- Description: Shows collection ID

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

* Add support to convert detailed mutations to query

* Add better key

* tighten GenomeCheckResult type

* add more tests

* fix typog

* type fix

* handle empty variants explicitly

* change key

---------

Co-authored-by: Claude Sonnet 4.5 <noreply@anthropic.com>
dependabot bot added 6 commits March 18, 2026 10:46
@dependabot
chore(backend): bump the minorandpatch group across 1 directory with …
1a4e340 
…5 updates (#1079)

Bumps the minorandpatch group with 5 updates in the /backend directory:

| Package | From | To |
| --- | --- | --- |
| [org.postgresql:postgresql](https://github.com/pgjdbc/pgjdbc) | `42.7.9` | `42.7.10` |
| [jvm](https://github.com/JetBrains/kotlin) | `2.3.10` | `2.3.20` |
| [plugin.spring](https://github.com/JetBrains/kotlin) | `2.3.10` | `2.3.20` |
| org.jlleitschuh.gradle.ktlint | `14.0.1` | `14.2.0` |
| gradle-wrapper | `9.3.1` | `9.4.0` |



Updates `org.postgresql:postgresql` from 42.7.9 to 42.7.10
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/master/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.7.9...REL42.7.10)

Updates `jvm` from 2.3.10 to 2.3.20
- [Release notes](https://github.com/JetBrains/kotlin/releases)
- [Changelog](https://github.com/JetBrains/kotlin/blob/v2.3.20/ChangeLog.md)
- [Commits](JetBrains/kotlin@v2.3.10...v2.3.20)

Updates `plugin.spring` from 2.3.10 to 2.3.20
- [Release notes](https://github.com/JetBrains/kotlin/releases)
- [Changelog](https://github.com/JetBrains/kotlin/blob/v2.3.20/ChangeLog.md)
- [Commits](JetBrains/kotlin@v2.3.10...v2.3.20)

Updates `org.jlleitschuh.gradle.ktlint` from 14.0.1 to 14.2.0

Updates `gradle-wrapper` from 9.3.1 to 9.4.0

---
updated-dependencies:
- dependency-name: org.postgresql:postgresql
  dependency-version: 42.7.10
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: jvm
  dependency-version: 2.3.20
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: plugin.spring
  dependency-version: 2.3.20
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: org.jlleitschuh.gradle.ktlint
  dependency-version: 14.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: gradle-wrapper
  dependency-version: 9.4.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
chore(website): bump the minorandpatch group across 1 directory with …
27c2198 
…12 updates (#1078)

Bumps the minorandpatch group with 11 updates in the /website directory:

| Package | From | To |
| --- | --- | --- |
| [axios](https://github.com/axios/axios) | `1.13.5` | `1.13.6` |
| [dayjs](https://github.com/iamkun/dayjs) | `1.11.19` | `1.11.20` |
| [katex](https://github.com/KaTeX/KaTeX) | `0.16.28` | `0.16.38` |
| [@astrojs/check](https://github.com/withastro/astro/tree/HEAD/packages/language-tools/astro-check) | `0.9.6` | `0.9.8` |
| [@iconify/tailwind4](https://github.com/iconify/iconify-tailwind/tree/HEAD/packages/plugin) | `1.2.1` | `1.2.3` |
| [@tailwindcss/vite](https://github.com/tailwindlabs/tailwindcss/tree/HEAD/packages/@tailwindcss-vite) | `4.1.18` | `4.2.1` |
| [@typescript-eslint/eslint-plugin](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/eslint-plugin) | `8.56.0` | `8.57.1` |
| [@typescript-eslint/parser](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/parser) | `8.56.0` | `8.57.1` |
| [daisyui](https://github.com/saadeghi/daisyui/tree/HEAD/packages/daisyui) | `5.5.18` | `5.5.19` |
| [msw](https://github.com/mswjs/msw) | `2.12.10` | `2.12.11` |
| [typescript-eslint](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/typescript-eslint) | `8.56.0` | `8.57.1` |



Updates `axios` from 1.13.5 to 1.13.6
- [Release notes](https://github.com/axios/axios/releases)
- [Changelog](https://github.com/axios/axios/blob/v1.x/CHANGELOG.md)
- [Commits](axios/axios@v1.13.5...v1.13.6)

Updates `dayjs` from 1.11.19 to 1.11.20
- [Release notes](https://github.com/iamkun/dayjs/releases)
- [Changelog](https://github.com/iamkun/dayjs/blob/dev/CHANGELOG.md)
- [Commits](iamkun/dayjs@v1.11.19...v1.11.20)

Updates `katex` from 0.16.28 to 0.16.38
- [Release notes](https://github.com/KaTeX/KaTeX/releases)
- [Changelog](https://github.com/KaTeX/KaTeX/blob/main/CHANGELOG.md)
- [Commits](KaTeX/KaTeX@v0.16.28...v0.16.38)

Updates `@astrojs/check` from 0.9.6 to 0.9.8
- [Release notes](https://github.com/withastro/astro/releases)
- [Changelog](https://github.com/withastro/astro/blob/main/packages/language-tools/astro-check/CHANGELOG.md)
- [Commits](https://github.com/withastro/astro/commits/@astrojs/check@0.9.8/packages/language-tools/astro-check)

Updates `@iconify/tailwind4` from 1.2.1 to 1.2.3
- [Commits](https://github.com/iconify/iconify-tailwind/commits/HEAD/packages/plugin)

Updates `@tailwindcss/vite` from 4.1.18 to 4.2.1
- [Release notes](https://github.com/tailwindlabs/tailwindcss/releases)
- [Changelog](https://github.com/tailwindlabs/tailwindcss/blob/main/CHANGELOG.md)
- [Commits](https://github.com/tailwindlabs/tailwindcss/commits/v4.2.1/packages/@tailwindcss-vite)

Updates `@typescript-eslint/eslint-plugin` from 8.56.0 to 8.57.1
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/main/packages/eslint-plugin/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v8.57.1/packages/eslint-plugin)

Updates `@typescript-eslint/parser` from 8.56.0 to 8.57.1
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/main/packages/parser/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v8.57.1/packages/parser)

Updates `daisyui` from 5.5.18 to 5.5.19
- [Release notes](https://github.com/saadeghi/daisyui/releases)
- [Changelog](https://github.com/saadeghi/daisyui/blob/master/CHANGELOG.md)
- [Commits](https://github.com/saadeghi/daisyui/commits/v5.5.19/packages/daisyui)

Updates `msw` from 2.12.10 to 2.12.11
- [Release notes](https://github.com/mswjs/msw/releases)
- [Changelog](https://github.com/mswjs/msw/blob/main/CHANGELOG.md)
- [Commits](mswjs/msw@v2.12.10...v2.12.11)

Updates `tailwindcss` from 4.1.18 to 4.2.1
- [Release notes](https://github.com/tailwindlabs/tailwindcss/releases)
- [Changelog](https://github.com/tailwindlabs/tailwindcss/blob/main/CHANGELOG.md)
- [Commits](https://github.com/tailwindlabs/tailwindcss/commits/v4.2.1/packages/tailwindcss)

Updates `typescript-eslint` from 8.56.0 to 8.57.1
- [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases)
- [Changelog](https://github.com/typescript-eslint/typescript-eslint/blob/main/packages/typescript-eslint/CHANGELOG.md)
- [Commits](https://github.com/typescript-eslint/typescript-eslint/commits/v8.57.1/packages/typescript-eslint)

---
updated-dependencies:
- dependency-name: axios
  dependency-version: 1.13.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: dayjs
  dependency-version: 1.11.20
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: katex
  dependency-version: 0.16.38
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: "@astrojs/check"
  dependency-version: 0.9.8
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: "@iconify/tailwind4"
  dependency-version: 1.2.3
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: "@tailwindcss/vite"
  dependency-version: 4.2.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: "@typescript-eslint/eslint-plugin"
  dependency-version: 8.57.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: "@typescript-eslint/parser"
  dependency-version: 8.57.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: daisyui
  dependency-version: 5.5.19
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: msw
  dependency-version: 2.12.11
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: minorandpatch
- dependency-name: tailwindcss
  dependency-version: 4.2.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
- dependency-name: typescript-eslint
  dependency-version: 8.57.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: minorandpatch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
chore(github-actions): bump docker/metadata-action from 5 to 6 (#1071)
d46a82b 
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5 to 6.
- [Release notes](https://github.com/docker/metadata-action/releases)
- [Commits](docker/metadata-action@v5...v6)

---
updated-dependencies:
- dependency-name: docker/metadata-action
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
chore(github-actions): bump docker/login-action from 3 to 4 (#1070)
6c6785e 
Bumps [docker/login-action](https://github.com/docker/login-action) from 3 to 4.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](docker/login-action@v3...v4)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-version: '4'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
chore(github-actions): bump docker/setup-buildx-action from 3 to 4 (#…
39bc779 
…1069)

Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3 to 4.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](docker/setup-buildx-action@v3...v4)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-version: '4'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
chore(github-actions): bump docker/build-push-action from 6 to 7 (#1068)
8d23c01 
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6 to 7.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v6...v7)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-version: '7'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot @fhennig
chore(website): bump @genspectrum/dashboard-components from 1.15.0 to…
c34eaea 
… 1.16.0 in /website (#1082)

* chore(website): bump @genspectrum/dashboard-components in /website

Bumps [@genspectrum/dashboard-components](https://github.com/GenSpectrum/dashboard-components/tree/HEAD/components) from 1.15.0 to 1.16.0.
- [Release notes](https://github.com/GenSpectrum/dashboard-components/releases)
- [Changelog](https://github.com/GenSpectrum/dashboard-components/blob/main/components/CHANGELOG.md)
- [Commits](https://github.com/GenSpectrum/dashboard-components/commits/dashboard-components-v1.16.0/components)

---
updated-dependencies:
- dependency-name: "@genspectrum/dashboard-components"
  dependency-version: 1.16.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

* new type

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Felix Hennig <mail@felixhennig.com>
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3 participants

@fengelniederhammer @fhennig @chaoran-chen